Feeding patterns are emerging as critical regulators of cardiometabolic health; however, their impact on atherosclerotic cardiovascular disease (ASCVD) remains incompletely understood. Here, we demonstrate that feeding during the active phase (i.e., the dark/nighttime phase, when mice are active), either ad libitum (unrestricted access) or restricted to the nighttime (limited to the dark phase), confers significant protection against atherosclerosis in Apoe^⁻/⁻ mice, compared to misaligned feeding during the inactive phase (restricted to the light phase). Multi–omics integration revealed that this atheroprotective effect is mediated by gut microbiota–driven modulation of bile acid (BA) metabolism, particularly involving taurolithocholic acid (TLCA), a potent agonist of the G protein–coupled bile acid receptor TGR5. Daytime feeding disrupted the relative abundance of BA–transforming taxa (e.g., Dubosiella, Clostridium) and downregulated key microbial genes (baiA, baiB, cbh, hdhA, and AMACR), leading to reduced TLCA biosynthesis. Despite unaltered hepatic expression of BAAT, FXR, and CYP7A1, compensatory upregulation of CYP7B1 was insufficient to restore TLCA levels. Consequently, impaired vascular TGR5 signaling promoted endothelial inflammation and reduced cholesterol efflux by downregulating ABCA1 expression, thereby facilitating plaque formation. These findings identify the microbiota–BA–TGR5 axis as a critical mediator of feeding rhythm–linked atheroprotection and underscore the therapeutic potential of chrono–nutrition in ASCVD prevention.