Soil moisture is a critical component of the soil-plant-atmosphere continuum (SPAC) in fruit trees. However, high-precision monitoring of orchard soil moisture at the regional scale still remains a challenge. This study presents a two-stage feature space model to estimate root zone soil moisture using UAV remote sensing data. The results indicate that the temperature-leaf area index (TLDI) is negatively correlated with soil water content. The upper triangular space performs highly effectively for deep soil moisture inversion, with R² values ranging from 0.56 to 0.66, RMSE between 0.20 and 0.27, and RPD from 1.25 to 1.50. Conversely, the lower triangular space yields superior results for shallow soil moisture inversion, with R² values between 0.67 and 0.82, RMSE from 0.15 to 0.19, and RPD between 1.67 and 2.09. The results suggest that the lower triangular space is optimal for shallow soil moisture inversion, while the upper triangular space is more suited for deep soil moisture inversion. This study presents a novel approach for estimating deep soil moisture in orchards, providing a theoretical basis for improving soil moisture management.