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A Bi-LSTM Prediction Method for Apple First Flowering Date Based on Enhanced Time-Series Temperature Features
Smart Agriculture 2026, 8(2): 86-97
Published: 01 March 2026
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Objective

The first flowering date of apples is a key phenological stage in the annual growth cycle of fruit trees. Its occurrence timing is directly associated with pollination efficiency, fruit set rate, and subsequent fruit development, and it also serves as an important basis for orchard management practices, including flower and fruit thinning, pest and disease control, as well as early risk warning and emergency management for low-temperature frost events during the flowering period. Existing studies still have room for improvement in the fine-scale extraction of temperature time-series information and in the representation of model adaptability across different spatial locations. Therefore, the purpose of this research is to develop a prediction method for the first flowering date of apples that can effectively characterize time-varying temperature patterns and achieve regional adaptability, thereby providing more reliable technical support for refined orchard management and disaster prevention.

Methods

A deep learning-based forecasting framework for predicting the first flowering date of apples was developed based on observation sites in Luochuan county, Shaanxi province. First, daily near-surface air temperature (NSAT) data from 2019 to 2021 were collected for the period from apple harvest to the subsequent flowering season in the study area, including daily maximum, mean, and minimum temperatures. In addition, elevation, latitude, and longitude were introduced as static geographic factors, forming a combined input composed of dynamic temperature sequences and static spatial attributes. Second, in terms of the model design, a bidirectional long short-term memory network (Bi-LSTM) was employed as the temporal encoder to learn bidirectional dependencies within the temperature time series. On this basis, a customized multi-head attention (MHA) mechanism was integrated, consisting of a local dependency head, a global trend head, and a cumulative feature head, which were designed to represent short-term pre-flowering temperature fluctuations, overall temperature trends, and cumulative temperature effects, respectively. This configuration enhanced the extraction of time-varying information across multiple temporal scales. The attention outputs were then fused with the static geographic factors, and the predicted first flowering date was generated through a regression layer, enabling regionally adaptive prediction. To ensure comparability of results, LSTM and Bi-LSTM models were simultaneously constructed as baseline models using identical data preprocessing and training procedures. Third, Bayesian optimization was applied for automatic hyperparameter tuning, during which key parameters, including learning rate, number of network layers, number of hidden units, regularization terms, and optimizers, were systematically searched, and the optimal configuration was selected based on validation performance. Finally, a cross-year validation strategy was adopted to evaluate model generalization ability: Data from 2019 to 2021 were used as the modeling dataset (training and validation), while the observed first flowering date in 2022 served as an independent test dataset. The predictive performance of all models was evaluated using three widely recognized metrics: root mean square error (RMSE), mean absolute error (MAE), and correlation coefficient (R).

Results and Discussions

The proposed model achieved an RMSE of 1.34 d, a MAE of 1.13 d, and the R of 0.84 on the test dataset, with most prediction errors concentrated within a range of 0-2 d. Validation results indicated that the proposed approach was capable of providing stable predictions approximately 15-20 d in advance within the study area. Further comparative analysis demonstrated that the Bi-LSTM architecture more effectively exploited both forward and backward dependencies in the pre-flowering temperature time series, thereby offering a more stable temporal representation for regression-based prediction of the first flowering date. Building upon this structure, the introduction of three attention heads: the local dependency head, the global trend head, and the cumulative feature head, enabled the model to more explicitly distinguish and utilize short-term fluctuations, stage-wise trends, and cumulative temperature effects. This targeted extraction of multi-scale time-varying information contributed to reduced prediction errors and improved overall prediction accuracy. Ablation experiments involving static geographic factors further verified the necessity of the spatial adaptability component. When the elevation was removed, the RMSE increased from 1.34 d to 1.45 d. Removing latitude and longitude led to a larger increase in RMSE to 2.54 d, and when both elevation and geographic coordinates were excluded, the RMSE further rose to 2.69 d accompanied by a decrease in correlation. These results indicated that geographic factors provided effective spatial constraints, which supported the learning of location-specific phenological responses across different sampling sites. In addition, spatial prediction maps revealed that the first flowering date in the study area exhibited a gradient distribution with respect to elevation to a certain extent. This spatial pattern was consistent with the modeling rationale of incorporating geographic factors into a unified prediction framework.

Conclusions

This study proposes a deep learning-based prediction method for the first flowering date of apples that integrates multi-dimensional temperature features, a multi-head attention mechanism, and geographic factors. The proposed method achieves relatively high prediction accuracy in cross-year forecasting and enables spatially adaptive prediction of the first flowering date of apples. These findings provide a new data-driven technical pathway for refined prediction of apple flowering phenology and offer important technical support for orchard flowering management, frost damage prevention, and agricultural production decision-making.

Open Access Research paper Issue
Estimating winter wheat biomass by coupling deep learning and hierarchical model using proximal remote sensing data
The Crop Journal 2026, 14(2): 650-661
Published: 03 December 2025
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Timely and accurate estimation of component biomass of winter wheat, including leaf dry biomass (LDB), stem dry biomass (SDB), and reproductive organ dry biomass (RDB), is critical for crop growth monitoring and yield assessment. Canopy spectra mainly reflect leaf information, allowing for effective LDB estimation, whereas estimating SDB and RDB requires consideration of growth stage effects. To address this, we developed a hybrid biomass estimation framework by combining deep learning with biomass allocation law. Specifically, (1) a component biomass hierarchical (CBH) model was proposed based on accumulated growing degree days (AGDD) and biomass allocation laws; (2) a deep learning model (LBNet), based on two-dimensional fractional-order differential (2DFOD) hyperspectral images, was pre-trained on PROSAIL-simulated data and fine-tuned with field data to improve LDB estimation; and (3) the LBNet and CBH models were integrated to estimate and map component biomass across multiple scales. The hybrid framework achieved robust performance across interannual, regional, and UAV-based validations. For LDB, the root mean square error (RMSE) was 0.28–0.38 t ha−1, with a normalized RMSE (nRMSE) of 9.79%–14.50%. The RMSEs for SDB and RDB were 0.88–1.63 t ha−1 (nRMSE = 11.05%–19.25%) and 0.76–2.22 t ha−1 (nRMSE = 9.29%–22.66%), respectively. Overall, the proposed method provides an effective approach for multi-stage biomass estimation of winter wheat and demonstrates highly promising potential for applications in smart agriculture and crop yield assessment.

Open Access Research Article Issue
Exploring the depth of the maize canopy LAI detected by spectroscopy based on simulations and in situ measurements
Plant Phenomics 2025, 7(3): 100100
Published: 07 September 2025
Abstract Collect

The vertical distribution of leaves plays a crucial role in the growth process of maize. Understanding the vertical spectral characteristics of maize leaves is crucial for monitoring their growth. However, accurate estimation of the vertical distribution of leaf area remains a significant challenge in practical investigations. To address this, we used a 3D RTM to simulate the layered canopy spectra of maize, revealing the impact of canopy structure on remote sensing penetration depth across different growth stages and planting densities. The results of this study revealed differences in detection depth across growth stages. During the early growth stage, the depth was concentrated in the bottom 1 to 3 leaves of the canopy, reaching 1 to 4 leaves at the ear stage and 1 to 7 leaves during the grain-filling stage. The planting density had a notable effect on the detection depth at the bottom of the canopy. Moreover, compared with the other spectral bands, the near-infrared spectral range exhibited greater sensitivity to density variations. In terms of LAI inversion, a FuseBell-Hybrid model was constructed. We analyzed VIs across different planting density and canopy structural scenarios and found that compared with lower layers, increased density reduced the relative change rate in the upper leaf layers. The sensitivity patterns differed between plant architectures: VIred exhibited density-dependent sensitivity, with distinct responses between plant types, and MTVI2 demonstrated optimal performance for mid-canopy monitoring. This study highlights the influence of the heterogeneous structural characteristics of maize canopies on remote sensing detection depth during different phenological stages, providing theoretical support for enhancing multilayer crop monitoring in precision agriculture.

Issue
Multi-modal recognition method for non-grain cropland using remote sensing time series
Transactions of the Chinese Society of Agricultural Engineering 2024, 40(2): 283-294
Published: 31 January 2024
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Large-scale non-grain cultivation has posed a serious risk to national grain security. Non-grain cultivated land can also deteriorate the ecological environment, such as soil quality, greenhouse gas emissions and agricultural pollution. Therefore, it is of great significance for the accurate monitoring of non-grain cultivated land using remote sensing data. However, the existing research has focused mainly on the distribution of specific crop types or cash crop expansion. It is still lacking in the non-grain croplands and their spatial distribution. In this study, the remote sensing time series were selected to identify the non-grain croplands in Gaocheng District, Shijiazhuang City, Hebei Province, China. The spatial distribution of non-grain cropland was also obtained from 2019 to 2022. The results demonstrated that: 1) Both pixel and object-oriented machine learning showed a high classification accuracy to identify non-grain cultivated land. Spectral bands were integrated to extract the phenological features from the NDVI time series. The growth status and temporal patterns of different crops were captured to improve the classification accuracy. The low accuracy was also found in the time series matching on the open-field vegetables, greenhouses, and uncultivated croplands, due to the high within-class variability. A better performance was achieved to distinguish between grain crops and other land cover classes. 2) The pixel approach was more sensitive to the land cover at the pixel level, thus capturing the differences among various types of land cover. The object approach effectively reduced the salt-and-pepper noise, and then significantly improved the confusion among land cover categories with the high within-class variability. 3) The object machine learning exhibited the highest accuracy for the classification and identification of non-grain cropland conversion, with overall accuracies of 87.00% and 81.00% for two growing seasons, respectively. 4) The annual non-grain cropland area was 2 753.09 hectares, with the orchards accounting for up to 62.55% of the total. The seasonal non-grain analysis showed that the autumn non-grain area (3 174.86 hectares) was significantly higher than the summer ones (1 060.27 hectares). In conclusion, the different remote sensing time series can be expected to accurately identify and monitor the non-grain cultivated land. The specific recommendations were selected for the practical applications, according to the application needs and data availability. Machine learning can be selected to fuse the harmonic and phenological features, when the specific types of non-grain cultivated land need to be distinguished. However, the time series matching can also be used for the limited sample sizes without considering the specific non-grain cultivated land.

Issue
Grain Production Big Data Platform: Progress and Prospects
Smart Agriculture 2025, 7(2): 1-12
Published: 01 March 2025
Abstract PDF (85.8 MB) Collect
Downloads:95
Significance

The explosive development of agricultural big data has accelerated agricultural production into a new era of digitalization and intelligentialize. Agricultural big data is the core element to promote agricultural modernization and the foundation of intelligent agriculture. As a new productive forces, big data enhances the comprehensive intelligent management decision-making during the whole process of grain production. But it faces the problems such as the indistinct management mechanism of grain production big data resources, the lack of the full-chain decision-making algorithm system and big data platform for the whole process and full elements of grain production.

Progress

Grain production big data platform is a comprehensive service platform that uses modern information technologies such as big data, Internet of Things (IoT), remote sensing and cloud computing to provide intelligent decision-making support for the whole process of grain production based on intelligent algorithms for data collection, processing, analysis and monitoring related to grain production. In this paper, the progress and challenges in grain production big data, monitoring and decision-making algorithms are reviewed, as well as big data platforms in China and worldwide. With the development of the IoT and high-resolution multi-modal remote sensing technology, the massive agricultural big data generated by the "Space-Air-Ground" Integrated Agricultural Monitoring System, has laid an important foundation for smart agriculture and promoted the shift of smart agriculture from model-driven to data-driven. However, there are still some issues in field management decision-making, such as the requirements for high spatio-temporal resolution and timeliness of the information are difficult to meet, and the algorithm migration and localization methods based on big data need to be studied. In addition, the agricultural machinery operation and spatio-temporal scheduling algorithm based on remote sensing and IoT monitoring information to determine the appropriate operation time window and operation prescription, needs to be further developed, especially the cross-regional scheduling algorithm of agricultural machinery for summer harvest in China. Aiming to address the issues of non-bi-connected monitoring and decision-making algorithms in grain production, as well as the insufficient integration of agricultural machinery and information perception, a framework for the grain production big data intelligent platform based on digital twins is proposed. The platform leverages multi-source heterogeneous grain production big data and integrates a full-chain suit of standardized algorithms, including data acquisition, information extraction, knowledge map construction, intelligent decision-making, full-chain collaboration of agricultural machinery operations. It covers the typical application scenarios such as irrigation, fertilization, pests and disease management, emergency response to drought and flood disaster, all enabled by digital twins technology.

Conclusions and Prospects

The suggestions and trends for development of grain production big data platform are summarized in three aspects: (1) Creating an open, symbiotic grain production big data platform, with core characteristics such as open interface for crop and environmental sensors, maturity grading and a cloud-native packaging mechanism for core algorithms, highly efficient response to data and decision services; (2) Focusing on the typical application scenarios of grain production, take the exploration of technology integration and bi-directional connectivity as the base, and the intelligent service as the soul of the development path for the big data platform research; (3) The data-algorithm-service self-organizing regulation mechanism, the integration of decision-making information with the intelligent equipment operation, and the standardized, compatible and open service capabilities, can form the new quality productivity to ensure food safety, and green efficiency grain production.

Open Access Research paper Issue
Dynamic UAV data fusion and deep learning for improved maize phenological-stage tracking
The Crop Journal 2025, 13(3): 961-974
Published: 24 April 2025
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Downloads:27

Near real–time maize phenology monitoring is crucial for field management, cropping system adjustments, and yield estimation. Most phenological monitoring methods are post–seasonal and heavily rely on high–frequency time–series data. These methods are not applicable on the unmanned aerial vehicle (UAV) platform due to the high cost of acquiring time–series UAV images and the shortage of UAV–based phenological monitoring methods. To address these challenges, we employed the Synthetic Minority Oversampling Technique (SMOTE) for sample augmentation, aiming to resolve the small sample modelling problem. Moreover, we utilized enhanced “separation” and “compactness” feature selection methods to identify input features from multiple data sources. In this process, we incorporated dynamic multi–source data fusion strategies, involving Vegetation index (Ⅵ), Color index (CI), and Texture features (TF). A two–stage neural network that combines Convolutional Neural Network (CNN) and Long Short–Term Memory Network (LSTM) is proposed to identify maize phenological stages (including sowing, seedling, jointing, trumpet, tasseling, maturity, and harvesting) on UAV platforms. The results indicate that the dataset generated by SMOTE closely resembles the measured dataset. Among dynamic data fusion strategies, the Ⅵ–TF combination proves to be most effective, with CI–TF and Ⅵ–CI combinations following behind. Notably, as more data sources are integrated, the model’s demand for input features experiences a significant decline. In particular, the CNN–LSTM model, based on the fusion of three data sources, exhibited remarkable reliability when validating the three datasets. For Dataset 1 (Beijing Xiaotangshan, 2023: Data from 12 UAV Flight Missions), the model achieved an overall accuracy (OA) of 86.53%. Additionally, its precision (Pre), recall (Rec), F1 score (F1), false acceptance rate (FAR), and false rejection rate (FRR) were 0.89, 0.89, 0.87, 0.11, and 0.11, respectively. The model also showed strong generalizability in Dataset 2 (Beijing Xiaotangshan, 2023: Data from 6 UAV Flight Missions) and Dataset 3 (Beijing Xiaotangshan, 2022: Data from 4 UAV Flight Missions), with OAs of 89.4% and 85%, respectively. Meanwhile, the model has a low demand for input features, requiring only 54.55% (99 of all features). The findings of this study not only offer novel insights into near real–time crop phenology monitoring, but also provide technical support for agricultural field management and cropping system adaptation.

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