The ${\mathfrak{g}\mathfrak{l}}_3(\mathbb{C})$ rational Gaudin model governed by $3\times 3$ Lax matrix is applied to study the three-wave resonant interaction system (TWRI) under a constraint between the potentials and the eigenfunctions. And the TWRI system is decomposed so as to be two finite-dimensional Lie-Poisson Hamiltonian systems. Based on the generating functions of conserved integrals, it is shown that the two finite-dimensional Lie-Poisson Hamiltonian systems are completely integrable in the Liouville sense. The action-angle variables associated with non-hyperelliptic spectral curves are computed by Sklyanin's method of separation of variables, and the Jacobi inversion problems related to the resulting finite-dimensional integrable Lie-Poisson Hamiltonian systems and three-wave resonant interaction system are analyzed.