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Time-series data inversion of soil moisture content in root zone of kiwifruit using BiLSTM
Transactions of the Chinese Society of Agricultural Engineering 2025, 41(2): 112-119
Published: 30 January 2025
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Soil moisture content in the root zone is one of the most crucial factors in determining the healthy growth and yield of kiwifruit trees, particularly in dynamic monitoring of the soil moisture during fruit expansion. However, traditional monitoring cannot capture the continuous variation in soil moisture. In this study, a time-series data inversion was carried out on the soil moisture content in the root zone of kiwifruit. The fruits were taken from the Meixian kiwifruit experimental station in Baoji City, Shaanxi Province, China. Both unmanned aerial vehicles (UAV) equipped with multispectral sensors and ground-based moisture sensors were utilized to collect the spectral reflectance and soil moisture data over a period of 60 days, respectively, resulting in a total of 1440 datasets. The spectral data was processed to initially extract 20 vegetation indices, such as the Normalized Difference Vegetation Index (NDVI), Soil-Adjusted Vegetation Index (SAVI), and Green Normalized Difference Vegetation Index (GNDVI). The dataset was then refined to identify the most critical features for the soil moisture inversion. Pearson and Spearman correlation coefficients were employed to determine the nine most relevant vegetation indices. The indices were also optimized to reduce the model complexity for the high predictive power. Subsequently, the optimal indices were used as the inputs for three machine learning models: the Feedforward Neural Network (FFNN), the Long Short-Term Memory (LSTM) network, and the Bidirectional Long Short-Term Memory (BiLSTM) network. Among them, the FFNN served as a baseline to compare with the temporal models, due to the temporal independencies in the data. The experimental setup involved training and testing the three models using the dataset. The FFNN model was trained with the input features representing the selected vegetation indices without any temporal information. In contrast, the LSTM and BiLSTM models were designed to utilize the multi-day historical data, thus capturing the temporal dependencies in the soil moisture dynamics. The LSTM model was particularly effective in retaining the information over longer sequences, due to its memory cell architecture. While the BiLSTM extended the capability to consider both forward and backward temporal dependencies, thus providing a more comprehensive understanding of temporal relationships. The results indicated that the LSTM and BiLSTM models with the multi-day historical data significantly improved the prediction accuracy. Specifically, the LSTM model was achieved in the test dataset coefficient of determination (R2) value of 0.548 and a root mean square error (RMSE) of 2.68%, indicating the more effective temporal dependencies, compared with the FFNN. The FFNN model exhibited a relatively low performance on the test dataset, with an R² value of 0.269 and an RMSE of 3.56%, due to its inability to capture time-series information. Among them, the BiLSTM performed the best, thus achieving a test dataset R² value of 0.624 and an RMSE of 2.45%. This superior performance of the BiLSTM was attributed to both past and future contexts within the sequence, which enhanced its predictive capability for soil moisture dynamics. The better performance of temporal models was achieved in the dynamic prediction of soil moisture, compared with the non-temporal models. The LSTM and BiLSTM were incorporated with the temporal data for more accurate modeling of the complex interactions between vegetation indices and soil moisture content. Particularly, the precise prediction of soil moisture during fruit expansion was crucial to optimize the yield and quality. In conclusion, the time-series LSTM and BiLSTM models were proved to effectively monitor the soil moisture in the period of the kiwifruit fruit expansion. This approach can also offer valuable theoretical support to the water practices in orchards. The promising potential can integrate the multispectral UAV remote sensing data with deep learning in smart agriculture. Advanced temporal modeling can be expected to enhance the monitoring precision of soil moisture in sustainable and efficient crop production.

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Inversion method for root soil water content using improved CNN
Transactions of the Chinese Society of Agricultural Engineering 2024, 40(11): 85-91
Published: 01 June 2024
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Soil moisture is one of the most crucial indicators to develop the intelligent irrigation in kiwifruit orchards. However, the complex kiwifruit trees with the canopy, varying coverage and substantial shading have posed some challenges on the accurate prediction of the soil moisture content. Current algorithms are still lacking on the canopy image to estimate the root soil water content (RSWC) of kiwifruit trees using canopy spectral information in the field of UAV remote sensing. In this study, a Compound Visual Convolutional Regression Network (CVCRNet) was proposed to combine two sizes of convolutional layers, in order to extract convolutional features from image data. The fully connected layers were used to reduce the dimensionality of convolutional features. Thus, multispectral images were directly analyzed for RSWC inversion. Since there was no pooling layer in the network, all data within multispectral images was fully utilized to enhance the accuracy of inversion. Multispectral images of the canopy and RSWC were collected at a depth of 40 cm during the swelling period (May-September) of Xuxiang kiwifruit trees. The canopy image was processed and normalized to directly served as the input, in order to eliminate the manual feature extraction or complex structural analysis of the fruit tree canopy, as well as the correlation of vegetation indices. Deep convolutional features were extracted from the Red-Green-Near Infrared (RGN) images of kiwifruit tree canopies, in order to train the remote sensing dataset of kiwifruit orchard. The RSWC gradient maps were obtained by cubic spline interpolation. A gradient map of kiwifruit tree distribution was then generated to reflect the actual situation of water control, where the RSWC gradient maps was overlapped with the original ones. As such, the field application of the CVCRNet inversion was realized in this case. Additionally, the performance of RSWC was compared on the vegetation indices and traditional numerical models. A Multilayer Perceptron (MLP) network was introduced to establish a dual-index estimation model using Renormalized Difference Vegetation Index (RDVI) and Green Normalized Difference Vegetation Index (GNDVI). The data training showed that the epoch69 weight was selected to optimize the loss and explained variance score of the training and testing sets during CVCRNet training. The Mean Squared Error (MSE) of the training set was 1.358, with an Explained Variance Score (EVS) of 0.710, while the MSE and EVS were 0.889 and 0.737, respectively, for the testing set. The results showed that the leaves were selected in the center of the canopy in the image using CVCRNet, and then the greater weight was assigned to their reflectance information, leading to the inversion superior to traditional vegetation indices. The coefficient of determination (R2) for the CVCRNet test set was 0.827, with a Root Mean Squared Error (RMSE) of 0.787%; R2 was 0.743 and RMSE was 0.887% for all samples. The MLP test set yielded an R2 of 0.759 and an RMSE of 0.983%; R2 was 0.565, and RMSE was 2.516% for all samples. There was the significant lower CVCRNet inversion under bare ground, indicating only suitable for use during periods of high canopy coverage. The CVCRNet with images as the input was reduced the loss of multispectral image information in the complex distribution of kiwifruit orchard canopies. Canopy information extraction was enhanced to obtain the better soil moisture prediction. The soil data inversion was achieved in the complex canopy scenarios. The CNN networks can be expected for the canopy information inversion.

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