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Open Access Research Article Issue
Phylogeny and species diversity of Armillaria in China based on morphological, mating test, and GCPSR criteria
Mycology 2025, 16(2): 777-811
Published: 13 November 2024
Abstract Collect

More than 600 Chinese specimens of Armillaria were identified by mating tests, Genealogical Concordance Phylogenetic Species Recognition (GCPSR), and comparison of morphological characteristics. Sixteen Chinese Biological Species (CBS) of Armillaria were identified by 30,340 mate pair combinations. Fifteen Chinese Phylogenetic Species (CPS) were recognised based on Independent Evolutionary Lineage (IEL) recognition and concatenated six-gene analysis (actin, h3h, hisps, LSU rDNA, rpb1, and tef1α). All the biological species and phylogenetic species were identical and possessed the same species boundary, except for CBS K (A. mellea) and CBS G (A. mellea ssp. nipponica) which were the same phylogenetic species. On the basis of CBS and CPS, eight new species of Armillaria in China were distinguished using macro and micro morphology, and they are described as A. algida, A. amygdalispora, A. bruneocystidia, A. luteopileata, A. pungentisquamosa, A. sinensis, A. tibetica, and A. violacea. This study indicates that the GCPSR approach provides the same resolution as mating tests in identification of Armillaria species.

Open Access Research Article Issue
Diversity, divergence time, and biogeography of the genus Albatrellus (Agaricomycetes, Russulales)
Mycology 2025, 16(2): 738-776
Published: 10 October 2024
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The genus Albatrellus is an important group of stipitate terrestrial fungi in the order Russulales. Some species in the genus form ectomycorrhizae, mostly with trees of Pinaceae; some are wellknown edible mushrooms. However, its diversity and biogeography are unclear. Taxonomic and phylogenetic studies on Albatrellus were carried out by morphological examination, which included detailed observations of the fruiting body, spore shape and size, and other key features, together with potential hosts. These observations were then compared and analysed using multi-locus molecular phylogenetic analyses, including the internal transcribed spacer regions (ITS), the large subunit nuclear ribosomal RNA gene (nLSU), the translation elongation factor 1-α gene (tef1), the largest subunit of RNA polymerase Ⅱ (rpb1), the second largest subunit of RNA polymerase Ⅱ (rpb2), the small subunit mitochondrial rRNA gene (mtSSU), and the small subunit of the nuclear ribosomal RNA gene (nucSSU). The results demonstrated that the species of Albatrellus formed eight clades. Nine new species are described and illustrated, and two new combinations are proposed. A total of 38 species are accepted in Albatrellus worldwide. Of those species, 26, 7, and 8 species are distributed in Asia, Europe, and North America, respectively. The divergence time indicated that the maximum crown age of Albatrellus was approximately 70.5 million years ago, and East Asia and North America are the likely ancestral areas. Dispersal and differentiation to other continents occurred during the late Paleocene and Miocene. Three kinds of dispersal routes are proposed: East Asia and Europe, East Asia and North America, and Europe and North America.

Open Access Research Article Issue
Large-scale phylogenomic insights into the evolution of the Hymenochaetales
Mycology 2025, 16(2): 617-634
Published: 17 September 2024
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The Hymenochaetales is an order with most species as wood-inhabiting fungi that have high phylogenetic complexity and morphological diversity. Species in this order play important roles in forest ecosystems and include wood decomposers, pathogens, and those that form ectomycorrhizal associations. However, we have limited knowledge of the patterns of large-scale evolutionary history of the order. In this study, using 171 genomes, including 113 newly assembled, we reconstructed the phylogenomic relationships, divergence times, biogeographic patterns, morphological evolution of basidiomata, and patterns of speciation/extinction in the Hymenochaetales. The phylogenomic relationships of 12 families within the Hymenochaetales suggested that 10 families can be accepted, and 2 families rejected. Molecular clock dating analyses suggested that the Hymenochaetales possibly started a rapid family-wide and genuswide radiation during the early Cretaceous to late Jurassic and Cretaceous, respectively. Reconstruction of the ancestral state implied that Hymenochaetales probably originated from the temperate regions of Asia, with the basidiomata of the common ancestor likely being a corticioid species that rapidly transformed between the early Cretaceous and late Jurassic, coinciding with radiations at the family level. Furthermore, we detected a gradually increasing trend of speciation, extinction, and net diversification rates. We provided large-scale genomes of the Hymenochaetales and revealed evolutionary history patterns, which are key to understanding the evolution of fungi.

Open Access Research Article Issue
Diversity of macrofungi in southeast Xizang 1. The wood-decay fungi
Mycology 2025, 16(2): 635-669
Published: 26 August 2024
Abstract Collect

A survey on the diversity of wood-decay fungi in southeast Xizang was carried out from 2019 to 2023. Based on morphology, ecology, biogeography, and molecular biology, 558 species, belonging to three classes, 15 orders, 57 families, and 177 genera, were identified. One new species, Epithele miscanthi, is described. Species composition analysis showed that there were fifteen dominant families with more than 10 species. These families include 459 species, accounting for 82.26% of the total species found. Thirty-three genera with five or more species are treated as dominant genera, and 325 species were included in these genera, accounting for 58.24% of the total species. Among these, 313 species (56.09%) occurred on angiosperm wood only, 168 species (30.11%) on gymnosperm wood only, 45 species (8.06%) on both angiosperm and gymnosperm wood, 17 species (3.05%) on monocotyledons only, and only one species, Hymenochaete rheicolor, grew on both monocotyledons and dicotyledons. The highest number of species, 266 (47.67%), were found on fallen trunks, followed by fallen branches, rotten wood, stumps, dead standing trees, living trees, and charred wood with 175, 123, 116, 82, 57, and 4 species, respectively. In addition, 456 species cause a white rot and 85 species cause a brown rot, accounting for 81.72% and 15.23% of our studied species, respectively. Statistics were also made on the rotting type and the number of edible or medicinal fungi.

Open Access Research Article Issue
Polypore funga and species diversity in tropical forest ecosystems of Africa, America and Asia, and a comparison with temperate and boreal regions of the Northern Hemisphere
Forest Ecosystems 2024, 11(4): 100200
Published: 03 May 2024
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Polypores play a crucial role in energy recycling and forest regeneration in forest ecosystems. The majority of them are wood degraders; some are forest pathogens and others are ectomycorrhizal symbionts. The basidiocarps provide food and shelter for many organisms, mostly invertebrates, but also some vertebrates, as well as food and medicine for humans. Despite extensive research on the species diversity and phylogenetic relationships of polypores in recent years, there remains a lack of comprehensive understanding of their distribution patterns and species composition at the large scale. Checklists of polypores from the tropical zone, including tropical Africa, tropical America, and tropical Asia, were analyzed for species diversity, distribution patterns, major taxa, and nutritional modes. A total of 1,902 polypore species was found in the three regions, representing 8 orders, 46 families, and 250 genera of Agaricomycetes. The orders Polyporales (especially the family Polyporaceae) and Hymenochaetales (especially the family Hymenochaetaceae) had the most prolific taxa, with their species accounting for 93.4% of the total polypores listed. Each of 1,565 (or 82.3%) of the total 1,902 species were found in only one of the three regions studied, and we treat them temporarily as "regional endemic species". Only 141 species were shared among all three regions, accounting for a mere 7.4%. Tropical Africa and tropical America had the greatest number of shared species and the highest Sørensen similarity index (SC) value. Tropical forests had a higher species richness compared with temperate to boreal forests of the Northern Hemisphere, and in addition, also a higher proportion of white rot polypores compared to brown rot and ectomycorrhizal species. This study outlines the distribution patterns and species diversity of polypores in the world, shedding light on their ecological significance in diverse ecosystems.

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