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Open Access Intelligent Medicine and Prediction Model Issue
Construction of a pyroptosis-related gene-based diagnostic model for osteomyelitis and analysis of the mitochondria-inflammation interaction mechanism: a bioinformatics study integrating multi-omics and machine learning
Journal of Army Medical University 2026, 48(7): 914-927
Published: 15 April 2026
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Objective

Staphylococcus aureus (SA)-induced osteomyelitis (OM) is a common refractory orthopedic infection, presenting substantial challenges in early diagnosis and immune microenvironment characterization. Expression profiles of pyroptosis-related genes (PRGs) are closely associated with SA-OM; these genes may influence the immune microenvironment through mitochondrial-related pathways, thereby participating in disease progression, and specific gene combinations can be utilized to construct high-precision diagnostic models. This study aims to integrate multi-omics and machine learning to screen key pyroptosis-related diagnostic biomarkers in SA-OM, construct a high-precision diagnostic model, and elucidate its molecular mechanism influencing the immune microenvironment through “mitochondria-inflammation” crosstalk.

Methods

Based on 3 SA-OM datasets (GSE6269/GSE16129/GSE30119) retrieved from the GEO database, a total of 143 SA-OM patients and 79 healthy control samples were enrolled. Data preprocessing (batch effect correction using the sva package), differential expression analysis (DE-PRGs screened via the limma package, adj. P<0. 05 & |log2 FC| >0. 263), co-expression network construction (key module genes identified through WGCNA algorithm, softThreshold=5), multi-omics cross-validation (Pearson correlation analysis for MR-PRGs screening), machine learning modeling (feature genes selected via SVM-RFE/LASSO/random forest cross-validation, n=9), and diagnostic model construction (logistic regression nomogram model, efficacy evaluated through AUC, calibration curve slope, and DCA) were performed, combined with immune microenvironment analysis (CIBERSORT/ssGSEA quantitative analysis of 22 immune cell infiltration levels).

Results

Among 23 DE-PRGs, a diagnostic model comprising 8 key genes demonstrated excellent performance in both the training set (AUC=0. 89, 95%CI: 0. 83 to 0. 95) and validation set (AUC=0. 83, 95%CI: 0. 76 to 0. 90). RT-qPCR experiments further validated that the mRNA expression levels of the key pyroptosis pathway genes Caspase-1 and IL-18 in the SA-OM group were significantly upregulated compared with the control group (P<0. 05), corroborating the bioinformatics findings. The METTL3-MRPL39 axis was significantly enriched in “metabolic pathways” and “mitochondrial gene expression” biological processes. Furthermore, Th1/Th17 cell infiltration levels in the disease group were 3. 2-fold higher than those in the control group (P<0. 001), and METTL3 expression exhibited positive correlation with effector T cell infiltration (r=0. 65, P=0. 008).

Conclusion

This study systematically elucidates the regulatory network of pyroptosis-related genes in SA-OM. The constructed diagnostic model provides a novel tool for early screening, while the identified mitochondrial-inflammation interplay mechanisms and specific immune microenvironment characteristics establish a theoretical foundation for the development of targeted therapeutic strategies.

Open Access Research Article Just Accepted
An injectable AsCu-nanocomposite hydrogel breaks the pathological triad of acute osteomyelitis via synergistic bactericidal and macrophage-reprogramming therapy
Nano Research
Available online: 04 February 2026
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The clinical failure of conventional osteomyelitis treatments often arises from their inability to concurrently eradicate biofilms, resolve chronic inflammation, and promote bone repair. Therefore, there is an urgent need for a therapeutic approach that simultaneously addresses infection, immune dysregulation, and tissue loss. This study aims to develop a multifunctional nanocomposite hydrogel (AsCu@Gel) that integrates antibacterial, immunomodulatory, and osteoinductive properties for the comprehensive treatment of acute Staphylococcal osteomyelitis (AOM). We engineered a thermosensitive hydrogel encapsulating Astaxanthin-Copper nanoparticles (AsCu@NPs). The material was characterized for its structure, multi-stimuli responsive release (pH, enzyme, temperature), and biocompatibility. Its efficacy was evaluated through in vitro antibacterial and anti-biofilm assays, analysis of macrophage polarization, and osteogenic differentiation studies. A mouse model of implant-associated AOM was used to validate the in vivo therapeutic effects, immune modulation, and bone preservation. The AsCu@Gel system demonstrated potent, pH-enhanced antibacterial and anti-biofilm activity. Crucially, it synergistically polarized macrophages from a pro-inflammatory M1 to a pro-healing M2 phenotype, significantly elevating IL-10, ARG1, and CD206 while suppressing TNF-α, IL-6, and iNOS. Network pharmacology and experimental validation revealed that this dual action downregulated key inflammatory pathways (e.g., TLR9, MAPK8) and upregulated osteogenic signals (e.g., AKT1). In vivo, AsCu@Gel effectively eradicated infection, resolved systemic and local inflammation, and preserved bone architecture, outperforming monotherapy controls. The AsCu@Gel platform represents a shift from simple antibacterial treatment to a comprehensive strategy of anti-infection, anti-inflammatory, and pro-regeneration. Simultaneously disrupting biofilms and reprogramming the immune microenvironment toward regeneration offers a promising and innovative solution for treating complex bone infections.

Open Access Original Article Issue
Endothelial PDGF-BB/PDGFR-β signaling promotes osteoarthritis by enhancing angiogenesis-dependent abnormal subchondral bone formation
Bone Research 2022, 10: 58
Published: 29 August 2022
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The mechanisms that coordinate the shift from joint homeostasis to osteoarthritis (OA) remain unknown. No pharmacological intervention can currently prevent the progression of osteoarthritis. Accumulating evidence has shown that subchondral bone deterioration is a primary trigger for overlying cartilage degeneration. We previously found that H-type vessels modulate aberrant subchondral bone formation during the pathogenesis of OA. However, the mechanism responsible for the elevation of H-type vessels in OA is still unclear. Here, we found that PDGFR-β expression, predominantly in the CD31hiEmcnhi endothelium, was substantially elevated in subchondral bones from OA patients and rodent OA models. A mouse model of OA with deletion of PDGFR-β in endothelial cells (ECs) exhibited fewer H-type vessels, ameliorated subchondral bone deterioration and alleviated overlying cartilage degeneration. Endothelial PDGFR-β promotes angiogenesis through the formation of the PDGFR-β/talin1/FAK complex. Notably, endothelium-specific inhibition of PDGFR-β by local injection of AAV9 in subchondral bone effectively attenuated the pathogenesis of OA compared with that of the vehicle-treated controls. Based on the results from this study, targeting PDGFR-β is a novel and promising approach for the prevention or early treatment of OA.

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