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CRISPR/Cas9-Mediated Editing of MODD Enhances Rice Dormancy
Scientia Agricultura Sinica 2024, 57(2): 227-235
Published: 16 January 2024
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【Objective】

Dormancy is an important agronomic trait of rice. Proper dormancy can inhibit the preharvest sprouting of rice and is a key factor to ensure yield and quality. However, the genes and regulatory networks of rice dormancy regulation still need further study. The MODD encoded a protein with unknown function, and it negatively regulate rice abscisic acid signaling and drought resistance, but its function in regulating rice dormancy is unknown. Studying the function of MODD in regulating rice dormancy will help to improve the rice dormancy regulatory network, and at the same time provide a new theoretical basis and germplasm resources for genetic breeding of preharvest sprouting resistance.

【Method】

Based on the gene sequences published in the RGAP database, a CRISPR-Cas9 knockout vector for MODD was constructed, and the calli of Zhonghua 11 was transformed through agrobacterium mediated genetic transformation to obtain transgenic rice plants. The MODD knockout homozygous lines were screened and identified using PCR amplification, sequencing technology, and qRT-PCR technology. The amino acid sequences of the two mutant lines (KO-1 and KO-2) were obtained according to the CDS of the two mutant lines, and then the protein sequences of ZH11 and the two mutant lines (KO-1 and KO-2) were compared by DNAMAN. The homologous genes of MODD in rice were screened using Linux system. Take the seeds 35 days after heading and investigated the germination rate of ZH11 and knockout lines. The yeast hybridization and LUC experiments were used to verify the upstream gene of MODD.

【Result】

Six MODD homologous genes were found in rice, which were LOC_Os07g41160, LOC_Os03g30570, LOC_Os03g53630, LOC_Os04g35430, LOC_Os03g17050, LOC_Os06g01170. The knockout vector was successfully constructed and transferred it into ZH11, two homozygous mutant lines (KO-1 and KO-2) were obtained. The qRT-PCR results showed that the expression level of MODD in the two mutant line (KO-1 and KO-2) was significantly reduced. Protein sequence analysis showed that the frameshift mutations of KO-1 and KO-2 caused the early termination of protein translation. The germination rate of the two mutant lines (KO-1 and KO-2) was significantly lower than that of ZH11 by 15% and 15% respectively on the third day after water absorption; After that, the difference gradually expanded and reached the maximum on the 6th day, which was significantly lower than that of ZH11 by 35% and 35% respectively. The preharvest sprouting of two mutant lines (KO-1 and KO-2) was significantly lower than that of ZH11. The results of Y1H experiment showed that ABI5 could bind to the promoter region of MODD in yeast, and the binding range was further reduced to less than 300bp. LUC results showed that the fluorescence value of ABI5 was 2.6 times that of none alone, indicating that ABI5 could activate the expression of MODD.

【Conclusion】

Knocking out MODD could increase seed dormancy, and MODD may regulate seed dormancy through ABA signaling pathway.

Open Access Research Article Issue
Genetic mechanism of heterosis for rice milling and appearance quality in an elite rice hybrid
The Crop Journal 2022, 10(6): 1705-1716
Published: 16 May 2022
Abstract PDF (1.8 MB) Collect
Downloads:14

Development of hybrid rice with high yield and grain quality is a goal of rice breeding. To investigate the genetic mechanism of heterosis for rice milling and appearance quality in indica/xian rice, QTL mapping was conducted using 1061 recombinant inbred lines (RILs) derived from a cross of the xian rice cultivars Quan9311B (Q9311B) and Wu-shan-si-miao (WSSM), and a backcross F1 (BC1F1) population developed by crossing the RILs with Quan9311A (Q9311A), combined with phenotyping in two environments. The F1 hybrid (Q9311A × WSSM) showed various degrees of heterosis for milling and appearance quality. A total of 142 main-effect QTL (M-QTL) and 407 pairs of epistatic QTL (E-QTL) were identified for five milling and appearance quality traits and grain yield per plant (GYP) in the RIL, BC1F1 and mid-parental heterosis (HMP) populations. Differential detection of QTL in three populations revealed that most additive loci detected in the RILs did not show heterotic effects, but some of them did contribute to BC1F1 trait performance. Unlike heterosis of GYP, single-locus overdominance and epistasis were the main contributors to heterosis for milling and appearance quality. Epistasis contributed more to the heterosis for milling quality than to that for appearance quality. Three (four) QTL regions harboring opposite (consistent) directions of favorable allele effects for GYP and grain quality were identified, indicating the presence of partial genetic overlaps between GYP and grain quality. Three strategies are proposed to develop hybrid rice with high yield and good grain quality: 1) pyramiding favorable alleles with consistent directions of gene effects for GYP and grain quality at the M-QTL on different chromosomes; 2) introgressing favorable alleles for GYP and grain quality into the parents and then pyramiding and fixing these additive effects in hybrids; and 3) pyramiding overdominant and dominant loci and minimizing or eliminating underdominant loci from the parents.

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