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Research Article

Design of artificial biomimetic channels with Na+ permeation rate and selectivity potentially outperforming the natural sodium channel

Zhi Zhu1Yan Zhao1Chao Chang2,3( )Shaojian Yan1Tingyu Sun1Shiyu Gu1Yangmei Li2 ( )Dengsong Zhang4Chunlei Wang4( )Xiao Cheng Zeng5( )
School of Optical-Electrical and Computer Engineering, University of Shanghai for Science and Technology, Shanghai 200093, China
Innovation Laboratory of Terahertz Biophysics, National Innovation Institute of Defense Technology, Beijing 100071, China
School of Physics, Peking University, Beijing 100871, China
International Joint Laboratory of Catalytic Chemistry, College of Sciences, Shanghai University, Shanghai 200444, China
Department of Materials Science and Engineering, City University of Hong Kong, Hong Kong 999077, China
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Abstract

Artificial ion channels that enable high-efficiency ion transport have important implications in nanofluidics and biomedical applications such as drug delivery. Herein, we show a simulation-based chemical design of a biomimetic sodium channel that possesses permeation rate and selectivity potentially higher than those of the state-of-the-art natural vertebrate voltage-gated sodium channels. Importantly, our theoretical findings have undergone empirical testing, aligning well with the Arrhenius law as derived from a diverse range of experimental results. The high-efficiency ion transport is achieved by anchoring the carboxylate functional groups within the channel filter. A key chemical guiding principle underlying the ion channel design is that the free-energy barrier for the Na+ passage across the channel should be comparable to typical thermal energy at room temperature. With the implementation of the chemical design, we found that the relatively low free-energy barrier can be attributed to the compensation effect of the carboxylate groups to the partially lost oxygen shell of the ion within the ion channel, as well as to the consonant vibration of the ions inside and outside the channel. This mechanistic understanding brings new insight, at the molecular level, into the high-efficiency ion transport across the designed membrane channels. The proof of principle achieved from the simulations will stimulate future experimental confirmation and potential applications of the high-performance artificial channels in nanofluidics and in bioinspired iontronics.

Graphical Abstract

This work presents a theoretical design of artificial sodium channel with higher ion permeability and selectivity than the natural channel, and provides deeper insights into the ion transport process, concerning system energy, hydration, vibration frequency, and friction. We find that ions exhibit free energy barriers comparable to thermal energy when inside the channel, as well as consonant vibrations and nearly the same friction both inside and outside the channel.

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Nano Research
Pages 8638-8646

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Cite this article:
Zhu Z, Zhao Y, Chang C, et al. Design of artificial biomimetic channels with Na+ permeation rate and selectivity potentially outperforming the natural sodium channel. Nano Research, 2024, 17(9): 8638-8646. https://doi.org/10.1007/s12274-024-6797-9
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Received: 11 April 2024
Revised: 24 May 2024
Accepted: 29 May 2024
Published: 23 July 2024
© Tsinghua University Press 2024