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Original Article | Open Access

Binary and Ternary Classification Prediction for Breast Cancer and Breast Sclerosing Adenosis With Interpretable Artificial Intelligence From Clinical and Imaging Features: A Retrospective, Diagnostic Accuracy Cohort Study

Yang Qu1 Jie Lian1Tianli Liu2Ying Xu1 Zhe Wang1 Futian Weng3,4,5 Jiahui Zhang1Xu Yang1 Jing Qin6Ming Wang6Wen Xu6 Wenbo Li6Lingyan Kong7 Xinyu Ren8Qiang Sun1 Bo Pan1 ( )Yidong Zhou1 ( )Yan Xu9 ( )
Department of Breast Surgery, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
School of Mathematical Sciences, Ocean University of China, Qingdao, Shandong, China
School of Medicine, Xiamen University, Xiamen, Fujian, China
National Institute for Data Science in Health and Medicine, Xiamen University, Xiamen, Fujian, China
Data Mining Research Center, Xiamen University, Xiamen, Fujian, China
Department of Ultrasound, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
Department of Radiology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
Department of Pathology, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing, China
MOE Key Laboratory of Marine Genetics and Breeding, College of Marine Life Sciences, Ocean University of China, Qingdao, Shandong, China

Yang Qu, Jie Lian, Tianli Liu, and Ying Xu have contributed equally to this work.

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Abstract

Background

Sclerosing adenosis (SA) and breast cancer (BC) often exhibit overlapping clinical, imaging, and pathological characteristics, making them difficult to differentiate. SA may also coexist with BC (SA + BC), including ductal carcinoma in situ (SA‐DCIS) and invasive breast cancer (SA‐IBC), which complicates diagnosis even when core‐needle biopsy (CNB) suggests SA. This study aimed to develop interpretable AI‐based binary and ternary classification models that leverage clinical and imaging features to distinguish SA‐only from SA + BC and to further differentiate among SA‐only, SA‐DCIS, and SA‐IBC.

Methods

We retrospectively analyzed a cohort of 726 patients with SA (January 2006 to December 2021), comprising 537 SA‐only and 189 SA + BC cases (90 SA‐DCIS, 99 SA‐IBC). Multiple machine learning algorithms—logistic regression, support vector machine, decision tree, XGBoost, and random forest—were compared using AUC, accuracy, F1‐score, and C‐index. Model interpretability was assessed with SHAP to elucidate feature contributions and identify key predictors. Additionally, we incorporated an independent external validation cohort consisting of 113 patients to verify the model's effectiveness.

Results

XGBoost consistently outperformed other algorithms in both tasks. Eight features emerged as most informative: age, ultrasound BI‐RADS category, maximum and minimum ultrasound diameters, ultrasound margin characteristics, biopsy procedure, mammographic density, and microcalcifications. For binary classification (SA‐only vs. SA + BC), XGBoost achieved an AUC of 0.925, accuracy of 0.883, and C‐index of 0.844. For ternary classification (SA‐only, SA‐DCIS, SA‐IBC), the model achieved an AUC of 0.888, accuracy of 0.811, and C‐index of 0.813. Age, ultrasound BI‐RADS, and minimum lesion diameter were consistently top predictors. We further proposed a three‐tier interpretability framework (global, cohort‐level; local, subgroup‐level; and individual, case‐level) to facilitate clinical translation.

Conclusion

Given the substantial risk of coexisting of SA with DCIS or IBC, and the potential for CNB to underestimate disease due to limited sampling, lesions diagnosed as SA on CNB should be evaluated with additional modalities before determining the need for surgical excision. The proposed interpretable AI model enhances discrimination between SA‐only and SA with concomitant breast cancer (SA + BC), thereby supporting more informed clinical decision‐making in breast disease management.

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References

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Cancer Innovation
Article number: e70049

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Cite this article:
Qu Y, Lian J, Liu T, et al. Binary and Ternary Classification Prediction for Breast Cancer and Breast Sclerosing Adenosis With Interpretable Artificial Intelligence From Clinical and Imaging Features: A Retrospective, Diagnostic Accuracy Cohort Study. Cancer Innovation, 2026, 5(1): e70049. https://doi.org/10.1002/cai2.70049

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Received: 06 July 2025
Revised: 17 December 2025
Accepted: 29 December 2025
Published: 05 March 2026
© 2026 The Author(s). Tsinghua University Press.

This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial‐NoDerivs License, which permits use and distribution in any medium, provided the original work is properly cited, the use is non‐commercial and no modifications or adaptations are made.