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Article | Open Access

Multimodal Graph-Enhanced Vision Transformer for Interpretable Skin Lesion Classification

Faten S. Alamri1Noor Ayesha2Afia Zafar3Adil Ali Saleem4( )Amjad R. Khan5
Department of Mathematical Sciences, College of Science, Princess Nourah Bint Abdulrahman University, Riyadh, Saudi Arabia
Center of Excellence in Cyber Security (CYBEX), Prince Sultan University, Riyadh, Saudi Arabia
Computer Science Department, The National University of Computer and Emerging Sciences (NUCES-FAST), Islamabad, Pakistan
Institute of Computer Science, Khwaja Fareed University of Engineering and Information Technology, Abu Dhabi Road, Rahim Yar Khan, Punjab, Pakistan
Artificial Intelligence & Data Analytics Lab, College of Computer and Information Sciences, Prince Sultan University, Riyadh, Saudi Arabia
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Abstract

The use of automated skin lesion classification is still a disadvantage, since there is a great visual similarity between benign and malignant lesions. The majority of deep learning methods utilize dermoscopic images only, without taking into account clinical metadata employed by dermatologists on a regular basis. The following paper proposes a vision-graph multimodal framework that links Image encoding to graph neural networks based on metadata representation through the fusion of learnable attention. The framework focuses on three limitations, which are underutilization of clinical context, absence of interpretability, and suboptimal incorporation of modalities. Gradient-weighted Class Activation Mapping++ (Grad-CAM++) is used to obtain dual explainability of visual attention, and SHapley Additive exPlanations (SHAP) to obtain feature importance. Examining the HAM10000 and Derm7pt datasets, statistically significant advances (p < 0.001) of 89.3% and 92.1% accuracy are obtained, which is 4.1% and 2.7% higher than baselines that can only use images. Focusing on weight analysis will provide metadata with 37.7% averaged variance with an error of 8.4%, which confirms the clinical importance of multimodal modeling. The study of ablation shows that graph-based metadata encoding is 1.4% better than standard multilayer perceptron encoding (p = 0.003).

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Computer Modeling in Engineering & Sciences
Article number: 38

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Cite this article:
Alamri FS, Ayesha N, Zafar A, et al. Multimodal Graph-Enhanced Vision Transformer for Interpretable Skin Lesion Classification. Computer Modeling in Engineering & Sciences, 2026, 147(1): 38. https://doi.org/10.32604/cmes.2026.080335

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Received: 07 February 2026
Accepted: 18 March 2026
Published: 27 April 2026
© The Author 2026.

This work is licensed under a Creative Commons Attribution 4.0 International License, which permits unrestricted use, distribution, and reproduction in any medium, provided the original work is properly cited.