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Research Article | Open Access

Caffeine as a microbiome modulator: a novel therapeutic strategy for hypertriglyceridemia-related acute pancreatitis

Junjie Fana,b,1Nuoming Yina,b,1Huizhen Huanga,b,c,1Letian Pana,bYusen Hua,bWenfei QindWei XiaodBinqiang Xua,bYang Fua,bChunlan Huanga,bHuibiao DengeRuilong Wangf( )Yue Zenga,b,c( )Qixiang Meia,b( )
Shanghai Key Laboratory of Pancreatic Disease, Shanghai Jiao Tong University School of Medicine, Shanghai 201600, China
Department of Gastroenterology, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 201600, China
Shanghai General Hospital of Nanjing Medical University, Shanghai 201600, China
School of Health Science and Engineering, Shanghai Engineering Research Center of Food Microbiology, University of Shanghai for Science and Technology, Shanghai 200093, China
School of Health Department of Emergency and Critical Care Medicine, Shanghai General Hospital, Shanghai Jiao Tong University School of Medicine, Shanghai 201600, China
Department of Dermatology, Huashan Hospital, Fudan University, Shanghai 200040, China

1 These authors have contributed equally to this work.

Peer review under responsibility of Beijing Academy of Food Sciences.

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Highlights

Human Gut Metabolome-Microbiome Atlas in HAP: Metabolomic and metagenomic profiling of HAP patients uncovered a striking depletion of caffeine levels (3.2-fold vs. HTG controls, p<0.001), inversely correlated with disease severity (Spearman’s ρ = -0.74, p<0.0001).

Microbiota-Dependent Therapeutic Efficacy: caffeine’s protective effects in HAP mice (reducing pancreatic necrosis by 68%, p<0.01) were abolished upon microbiota ablation, establishing gut microbes as indispensable mediators.

Faecalibacterium prausnitzii as a caffeine-Responsive Keystone Species: This anti-inflammatory commensal, depleted 5.1-fold in HAP patients (p<0.001), was identified as the primary driver of caffeine’s efficacy through fecal microbiota transplantation (FMT) and mono-colonization experiments.

Mechanistic Breakthrough – TLR4/NLRP3 Signaling Axis: Multi-tissue RNA-seq and TLR4-/- models revealed caffeine suppresses gut barrier disruption by inhibiting TLR4-dependent NLRP3 inflammasome activation (IL-1β ↓72%, p<0.001), linking microbial modulation to systemic inflammation resolution.

Direct Clinical Translation: We propose caffeine as the nutritional intervention targeting the gut-pancreas axis for HAP, supported by dose-response validation and safety profiling in preclinical models.

Abstract

Hypertriglyceridemia (HTG) is a common and significant contributor to acute pancreatitis (AP). Caffeine has been reported to have a protective effect against pancreatic disorders. However, the role of caffeine in hypertriglyceridemia acute pancreatitis (HAP) is still unknown. To investigate a new understanding of the relationship between caffeine and gut microbiota in HAP development. Using multi-omics analysis of 71 HAP and HTG patients, their characteristics of intestinal microecology were detected. HTG mice models were established through either pharmacological induction (P-407 intraperitoneal injection) or genetic ablation of GPIHBP1 (GPIHBP1−/−). Genes deferentially expressed in the gut were identified by RNA sequencing and the role of caffeine in reshaping gut microbial networks was investigated. Caffeine levels decreased significantly in HAP patients and were inversely correlated with the severity of HAP. Caffeine maintained the intestinal homeostasis and attenuated HAP through a gut microbiota-dependent manner in the mouse model. Specially, the commensal Faecalibacterium prausnitzii, which contributed most in distinguishing the differences between HTG and HAP patients, has been found to be related to the effect of caffeine on alleviating HAP. RNA sequencing combined with TLR4−/− mice revealed that TLR4/NLRP3 may be the key signaling pathway for caffeine to maintain intestinal homeostasis and alleviating HAP. This study reveals the gut metabolites and microbiota characteristics of HAP and HTG patients, and explores the therapeutic potential of caffeine against HAP from the perspective of gut microbiota.

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Food Science and Human Wellness
Article number: 9250861

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Cite this article:
Fan J, Yin N, Huang H, et al. Caffeine as a microbiome modulator: a novel therapeutic strategy for hypertriglyceridemia-related acute pancreatitis. Food Science and Human Wellness, 2026, 15(1): 9250861. https://doi.org/10.26599/FSHW.2025.9250861

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Received: 07 July 2025
Revised: 07 October 2025
Accepted: 28 October 2025
Published: 10 March 2026
© 2026 Beijing Academy of Food Sciences. Publishing services by Tsinghua University Press.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).