Highlights
• A wheat germ (WG)-rich diet effectively attenuated ageing-induced microstructural damage and differentiation activity changes in the femur.
• The WG-rich diet improved ageing-related oxidation state imbalance and inflammatory response.
• The WG-rich diet enhanced SCFAs-producing microbes and reduced inflammation-related microbes.
• The WG-rich diet ameliorated plasma metabolites related to bone homeostasis.

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