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Publishing Language: Chinese

From Gene Expression to Transcriptome-wide Association Study: Development and Comparison of Methodology

Kun FANG1,2,3,4Guozhuang LI1,2,3,4Linting WANG5Qing LI1,2,3,4Kexin XU1,2,3,4Lina ZHAO1,2,3,4Zhihong WU1,2,3,4Jianguo ZHANG1,2,3,4( )Nan WU1,2,3,4( )
Orthopedic Department, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100730, China
Key Laboratory of Big Data for Spinal Deformities, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100730, China
Beijing Key Laboratory of Big Data Innovation and Application for Skeletal Health Medical Care, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100730, China
State Key Laboratory of Complex Severe and Rare Diseases, Peking Union Medical College Hospital, Chinese Academy of Medical Sciences & Peking Union Medical College, Beijing 100730, China
Academy of Mathematics and Systems Science, Chinese Academy of Sciences, Beijing 100190, China
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Abstract

Over the past two decades, genome-wide association study(GWAS) has identified numerous genetic variants and loci associated with heritable diseases. With the gradual maturation and saturation of GWAS methodologies, transcriptome-wide association study(TWAS) offers a novel perspective by linkinggenetic phenotypes to gene expression levels. By integrating TWAS with other multi-omics analyses, researchers can gain a deeper understanding of heritable diseases. This article provides an overview of recent groundbreaking and representative TWAS methods and tools, analyzes their strengths and limitations, and discusses future trends in TWAS development.

CLC number: R394; R446 Document code: A Article ID: 1674-9081(2026)01-0223-07

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Medical Journal of Peking Union Medical College Hospital
Pages 223-229

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Cite this article:
FANG K, LI G, WANG L, et al. From Gene Expression to Transcriptome-wide Association Study: Development and Comparison of Methodology. Medical Journal of Peking Union Medical College Hospital, 2026, 17(1): 223-229. https://doi.org/10.12290/xhyxzz.2024-0920

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Received: 16 November 2024
Accepted: 03 March 2025
Published: 09 January 2026
© 2026 Medical Journal of Peking Union Medical College Hospital