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CGG-Based Segmentation and Counting of Densely Distributed Rice Seeds in Seedling Trays

Meng Ouyang1Rong Zou1( )Jin Chen1Yaoming Li2Yuhang Chen1Hao Yan1
School of Mechanical Engineering, Jiangsu University, Zhenjiang 212013, China
School of Agricultural Engineering, Jiangsu University, Zhenjiang 212013, China
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Abstract

Objective

The precise quantification of rice seeds within individual cavities of seedling trays constitutes a critical operational parameter for optimizing seeding efficiency and fine-tuning the performance of air-vibration precision seeders. Achieving high accuracy in this task directly impacts resource utilization, seedling uniformity, and ultimately crop yield. However, the operational environment presents significant challenges, including complex backgrounds, seed overlap, variations in lighting and seed orientation, and the inherent difficulty of distinguishing individual seeds within dense clusters. These factors often lead to suboptimal performance in existing automated detection systems, manifesting as low detection accuracy and an inability to achieve robust, precise instance segmentation of individual rice seeds. To address these persistent limitations and advance the state-of-the-art in precision seeding monitoring, an integrated framework for rice seed instance segmentation was proposed. The core innovation lies in the synergistic combination of a cross-modal grounding generation (CGG) network with a pretrained model, which is designed to leverage complementary information from visual and textual domains.

Methods

The proposed methodology fundamentally aimed to bridge the gap between visual perception and semantic understanding within the specific context of rice seed detection. The CGG-pretrained model framework achieved this through deep joint alignment of visual features extracted from seedling tray images and textual features derived from contextual knowledge. This cross-modal grounding enabled collaborative learning, where the visual processing stream (handling object localization and pixel-level segmentation) was continuously informed and refined by the semantic understanding stream (interpreting context and relationships). Specifically, the visual backbone network processes input imagery to generate feature maps, while the pretrained language model component, which utilized contextual embeddings, generated semantically rich textual representations. The CGG module acted as the fusion engine, establishing explicit correspondences between specific regions in the image (potential seeds or clusters) and relevant semantic concepts or descriptors provided by the pretrained model. This bidirectional interaction significantly enhanced the model's ability to disambiguate overlapping seeds, resolved occlusions, and accurately delineated individual seed boundaries under challenging conditions. Key technical innovations validated through rigorous ablation studies include: (1) The strategic use of the bootstrapping language-image pre-training (BLIP) model for generating high-quality pseudo-labels from unlabeled or weakly labeled image data, facilitating more effective semi-supervised learning and reducing annotation burden, and (2) the application of bidirectional encoder representations from transformers (BERT)-based word embed to capture deep semantic relationships and contextual nuances within textual descriptors related to seeds and seeding environments.

Results and Discussions

The ablation experiments demonstrated a pronounced synergistic effect when the core improvements were combined, resulting in a segmentation accuracy improvement exceeding 3 percentage points compared to the baseline model that lacking the integration. Comprehensive experimental evaluation demonstrated the superior performance of the proposed CGG model against established benchmarks. Under the standard intersection over union (IoU) threshold of 0.5, the model achieved a mean average precision (mAP) of 90.7% for bounding box detection (denoted as mAP50bb for detection) and an outstanding 91.4% mAP for instance segmentation (denoted as mAP50seg for segmentation).These results represented a statistically significant improvement over leading contemporary models, including region-based convolutional neural network (Mask R-CNN) and Mask2Former, which highlighted the efficacy of the cross-modal grounding approach in accurately localizing and segmenting individual rice seeds. Further validation within realistic seeding trial scenarios, which involved direct comparison with meticulous manual annotations, confirmed the model's practical robustness. The CGG model attained the highest accuracy in two critical operational metrics: (1) Precision in segmenting individual seed instances (single-seed segmentation accuracy), and (2) accuracy in determining the exact seed count per cavity, and it achieved an average accuracy of 88% for per-cavity quantification. Moreover, the model exhibited superior performance in minimizing estimation errors for cavity seed counts, as evidenced by its significantly lower error metrics: a root mean square error (RMSE) of 16.8 seeds, a mean absolute error (MAE) of 13.7 seeds, and a mean absolute percentage error (MAPE) of 2.46%. These error values were markedly lower than those recorded by the comparison models, which underscored the CGG model's enhanced reliability in practical counting tasks. The discussion contextualized these results and attributed the performance gains to the model's ability to leverage semantic context to resolve ambiguities inherent in visualonly approaches, particularly in dense and overlapping seed scenarios common in precision seeding trays.

Conclusions

The developed CGG-pretrained model integration presents a significant advancement in automated monitoring for precision rice seeding. The model successfully addresses the core challenges of low detection accuracy and imprecise instance segmentation for seeds in complex environments. Its high accuracy in both individual seed segmentation and per-cavity seed count quantification, coupled with low error rates, demonstrates strong potential for practical deployment. Importantly, the model enables real-time detection of rice seeds during the image analysis stage, this functionality provides a quantifiable, data-driven basis for making immediate operational decisions, most notably enabling the targeted precision reseeding of empty or under-seeded cavities identified during the seeding process. By ensuring optimal seed placement and density from the outset, the technology contributes directly to improved resource efficiency (reducing seed waste), enhanced seedling uniformity, and potentially higher crop yields. Future work will focus on further optimizing inference speed for higher-throughput seeding lines and exploring generalization to other crop types and seeding mechanisms.

CLC number: S24 Document code: A Article ID: SA202507030

References

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Smart Agriculture
Pages 188-199

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Cite this article:
Ouyang M, Zou R, Chen J, et al. CGG-Based Segmentation and Counting of Densely Distributed Rice Seeds in Seedling Trays. Smart Agriculture, 2026, 8(2): 188-199. https://doi.org/10.12133/j.smartag.SA202507030

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Received: 21 July 2025
Published: 01 March 2026
© 2026 by the authors