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Ca1–xMgxY2Ge3O10 ceramics were synthesised using the solid-state reaction method. XRD analysis reveals that the solid solubility limit of Mg2+ in Ca1–xMgxY2Ge3O10 lies between x = 0.15 and 0.20. Multiple characterisation approaches, including Phillips–van Vechten–Levine theory and bond valence analysis, were employed to systematically elucidate the crystal structure and microwave dielectric properties. TEM analysis revealed a distinct superlattice structure in the material, characterised by an increased density of (001) planes along the [100] zone axis. The presence of superlattice in Ca0.9Mg0.1Y2Ge3O10 gives rise to a higher degree of lattice ordering, thereby reducing the intrinsic loss. The corrected dielectric constant shows a trend opposite to the αDT/Vm from Clausius–Mossotti (C–M) equation, primarily because of the rattling effect induced by Mg2+ substitution, which limits the applicability of the C–M equation. The intrinsic loss of CaY2Ge3O10 was assessed by far-infrared spectroscopy. Key factors governing the microwave dielectric properties include total lattice energy (Ut), ion activation energy (Ea), and packing fraction (P.F.), which collectively determine the variation in Q×f, whereas the average distortion of Y–O bonds (Ave(δY–O)), the rattling effect and proportion of Ge–O bonds in total polarizability (χ(Ge–O)/χ), primarily affect τf. The Ca0.9Mg0.1Y2Ge3O10 ceramic exhibits an enhanced Q×f, with microwave dielectric properties of εr = 10.1, Q×f = 106,440 GHz, and τf = −27.1 × 10−6 ℃−1. At x = 0.15, a reduced Ave(δY–O), a maximum χ(Ge–O)/χ, and a stronger rattling effect are observed, leading to a near-zero τf of −9.7 × 10−6 ℃−1, with εr = 10.3 and Q×f = 91,920 GHz.

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