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Research Article | Open Access

Soil texture drives rice methane emissions at tillering stage via carbon fractions, nutrients and microbial abundance

Deshun Xiao, Chang Ye, Hengyu Ma, Yanan Xu, Yi Tao, Junlin Zhu, Wenli Liao, Song Chen, Guang Chu, Yuanhui Liu, Kai Yu, Chunmei Xu( ), Danying Wang( )
State Key Laboratory of Rice Biology and Breeding, China National Rice Research Institute, Hangzhou 311400, China
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Highlights

• Soil texture was a core factor influencing CH4 emissions in paddy fields.

• Clay content exhibited the highest degree and closeness centrality.

• Clay content affected SOC composition, nutrients level, and microbial abundance.

• POC and MAOC showed contrasting effects on CH4 emissions.

• AVP and AVK correlated positively with mcrA and pmoA abundance.

Abstract

This study explored the complex mechanisms of methane (CH4) emissions in paddy fields, focusing on the often-overlooked role of soil texture. Through the analysis of 31 paddy soil samples, the research investigated the complex interactions among soil texture, organic carbon composition, soil nutrients, and microbial abundance in regulating CH4 emissions during the tillering stage of rice. The results revealed significant variations in CH4 emissions among different soils, which were notably associated with soil texture, organic carbon, nutrients levels, and microbial abundance. Soil texture, particularly clay content, emerged as a key factor influencing the composition of organic carbon, showing a significant positive correlation with mineral-associated organic carbon (MAOC). While organic carbon components significantly enhanced CH4 emissions, their effects were not uniform: particulate organic carbon correlated negatively with emissions, whereas MAOC showed a positive association. Soil texture also influenced nutrients availability, with clay content significantly correlated with soil nitrogen and phosphorus content, which in turn affects the abundance of functional genes. Specifically, mcrA abundance was positively correlated with available potassium, while pmoA abundance was positively correlated with available phosphorus. Additionally, dissolved organic carbon promoted pmoA abundance, although this effect was mitigated by higher clay content. Network analysis further emphasized the central role of soil texture, with clay exhibiting the highest degree and closeness centrality. In conclusion, soil texture is a fundamental and core factor influencing CH4 emissions at tillering of rice, exerting its influence through multiple pathways including modulating the composition of organic carbon, nutrient availability, and the abundance of methanogens and methanotrophs. These findings provide theoretical foundations for developing low-carbon cultivation strategies tailored to different soil textural characteristics.

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Journal of Integrative Agriculture (JIA)
Pages 4339-4350

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Cite this article:
Xiao D, Ye C, Ma H, et al. Soil texture drives rice methane emissions at tillering stage via carbon fractions, nutrients and microbial abundance. Journal of Integrative Agriculture (JIA), 2026, 25(10): 4339-4350. https://doi.org/10.1016/j.jia.2025.12.049

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Received: 03 September 2025
Revised: 28 October 2025
Accepted: 10 November 2025
Published: 26 December 2025
© 2026 CAAS.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/). Peer review under responsibility of Editorial Board of Journal of Integrative Agriculture.