Highlights
Machine learning models were developed to fill the missing soil inorganic carbon (SIC) of soil samples.
Cropland soils experienced an overall decrease in SIC during the 1980s–2010s.
Precipitation was the dominant driver and controlled the effect of N fertilization.
The magnitude of SIC decline varied parabolically with N fertilizer rates.
The high N fertilizer rate did not cause SIC loss in areas with rainfall<950 mm.
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