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Review Paper | Open Access

Epigenetic regulation of fruit anthocyanin biosynthesis in horticultural crops

Yan Wanga,1Feng Zhangb,1Dongxue RenaKuoxin ZengaYiqing SunaNiuniu WuaZhihong Zhanga( )
Liaoning Key Laboratory of Strawberry Breeding and Cultivation, College of Horticulture, Shenyang Agricultural University, Shenyang, Liaoning 110866, China
State Key Laboratory of Vegetable Biobreeding, Institute of Vegetables and Flowers, Chinese Academy of Agricultural Sciences, Beijing 100081, China

1 These authors contributed equally to this work.

Peer review under responsibility of Chinese Society of Horticultural Science (CSHS) and Institute of Vegetables and Flowers (IVF), Chinese Academy of Agricultural Sciences (CAAS).

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Abstract

Anthocyanins, a major water-soluble pigment in plants, endow horticultural plants with colors and nutritional value, and serve as a key factor in shaping fruit quality and commercial value. Over the past decades, epigenetic modifications have been indicated to significantly influence anthocyanin accumulation and response to various environmental cues. Recently, epigenetic regulation at the population level has become an increasingly important research focus. Here, we briefly describe the recent studies on epigenetic regulation of anthocyanin biosynthesis in horticultural crops, including the repressive role of DNA methylation, the dynamic gene expression control by histone modifications, and gene silencing or regulation mediated by non-coding RNAs. Furthermore, we also discuss recent technological breakthroughs in epigenetic editing and their potential applications in plant breeding. The review aims to provide new, more flexible research perspectives to enhance fruit quality in horticultural crops and to understand the molecular regulation of color formation.

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Horticultural Plant Journal
Pages 529-538

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Cite this article:
Wang Y, Zhang F, Ren D, et al. Epigenetic regulation of fruit anthocyanin biosynthesis in horticultural crops. Horticultural Plant Journal, 2026, 12(3): 529-538. https://doi.org/10.1016/j.hpj.2025.11.004

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Received: 20 August 2025
Accepted: 18 November 2025
Published: 30 January 2026
© 2026 Chinese Society for Horticultural Science.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).