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Full Length Article | Open Access

Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage Ⅰ–Ⅲ lung adenocarcinoma

Yongqiang Zhanga,b,1Zhao Yanga,1Yuqin Tangc,1Chengbin GuodDanni LindLinling ChengdXun Hue,f( )Kang Zhanga,d( )Gen Lib( )
West China School of Medicine, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China
Guangzhou Women and Children’s Medical Center, Guangzhou Medical University, Guangzhou, Guangdong 510620, China
State Key Laboratory of Southwestern Chinese Medicine Resources, School of Basic Medical Sciences, Chengdu University of Traditional Chinese Medicine, Chengdu, Sichuan 611137, China
Center for Biomedicine and Innovations, Faculty of Medicine, Macau University of Science and Technology, Macau 999078, China
Clinical Research Center, The Second Affiliated Hospital, School of Medicine, Zhejiang University, Hangzhou, Zhejiang 310003, China
Biorepository, State Key Laboratory of Biotherapy, West China Hospital, Sichuan University, Chengdu, Sichuan 610041, China

1 These authors contributed equally to this work.

Peer review under responsibility of Chongqing Medical University.

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Abstract

The high risk of postoperative mortality in lung adenocarcinoma (LUAD) patients is principally driven by cancer recurrence and low response rates to adjuvant treatment. Here, A combined cohort containing 1,026 stage Ⅰ–Ⅲ patients was divided into the learning (n = 678) and validation datasets (n = 348). The former was used to establish a 16-mRNA risk signature for recurrence prediction with multiple statistical algorithms, which was verified in the validation set. Univariate and multivariate analyses confirmed it as an independent indicator for both recurrence-free survival (RFS) and overall survival (OS). Distinct molecular characteristics between the two groups including genomic alterations, and hallmark pathways were comprehensively analyzed. Remarkably, the classifier was tightly linked to immune infiltrations, highlighting the critical role of immune surveillance in prolonging survival for LUAD. Moreover, the classifier was a valuable predictor for therapeutic responses in patients, and the low-risk group was more likely to yield clinical benefits from immunotherapy. A transcription factor regulatory protein–protein interaction network (TF-PPI-network) was constructed via weighted gene co-expression network analysis (WGCNA) concerning the hub genes of the signature. The constructed multidimensional nomogram dramatically increased the predictive accuracy. Therefore, our signature provides a forceful basis for individualized LUAD management with promising potential implications.

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Genes & Diseases
Pages 1657-1674

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Cite this article:
Zhang Y, Yang Z, Tang Y, et al. Hallmark guided identification and characterization of a novel immune-relevant signature for prognostication of recurrence in stage Ⅰ–Ⅲ lung adenocarcinoma. Genes & Diseases, 2023, 10(4): 1657-1674. https://doi.org/10.1016/j.gendis.2022.07.005

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Received: 12 March 2022
Revised: 07 June 2022
Accepted: 16 July 2022
Published: 05 August 2022
© 2022 The Authors.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).