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Review | Open Access

Synthetic metabolic engineering of functional crops: Boosting nutrition and human health

Nan Chaia,1Jie Xub,1Ruixiang Zhanga,1Guangzhou LiaJun WenaLiying SuaYang XueaTie LiaJialin LiuaDongchang ZengcJiantao TandJiaqi HuangeLetian ChenaYao-Guang Liua( )Qinlong Zhua( )
Guangdong Basic Research Center of Excellence for Precise Breeding of Future Crops, Guangdong Laboratory for Lingnan Modern Agriculture, State Key Laboratory for Conservation and Utilization of Subtropical Agro-Bioresources, College of Agriculture, College of Life Sciences, South China Agricultural University, Guangzhou 510642, Guangdong, China
College of Resources and Environment, Academy of Agricultural Sciences, Southwest University, Chongqing 400716, China
University Engineering Research Center of Bioinformation and Genetic Improvement of Specialty Crops, Guangxi, College of Life Sciences, Guangxi Normal University, Guilin 541006, Guangxi, China
Rice Research Institute, Guangdong Academy of Agricultural Sciences, Guangzhou 510640, Guangdong, China
Engineering Research Center of Protection and Utilization of Plant Resources, College of Bioscience and Biotechnology, Shenyang Agricultural University, Shenyang 110866, Liaoning, China

1 These authors contributed equally to this work.

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Abstract

A growing global population and the increasing prevalence of diet-related health issues such as “hidden hunger”, obesity, hypertension, and diabetes necessitate a fundamental rethinking of crop design and breeding. Synthetic metabolic engineering offers a method to modify and redesign metabolic pathways to increase the nutritional value of crops. We summarize recent advances in the biofortification of key nutrients including provitamin A, vitamin C, vitamin B9, iron, zinc, anthocyanins, flavonoids, and unsaturated fatty acids. We discuss the potential of multi-gene stacking, gene editing, enzyme engineering, and artificial intelligence in synthetic metabolic engineering. We propose future research directions and potential solutions centered on leveraging AI-driven systems biology, precision gene editing, enzyme engineering, agrobacterium-mediated genotype-independent transformation, and modular metabolic engineering strategies to develop next-generation nutritionally enhanced super crops and transform global food systems.

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The Crop Journal
Pages 8-21

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Cite this article:
Chai N, Xu J, Zhang R, et al. Synthetic metabolic engineering of functional crops: Boosting nutrition and human health. The Crop Journal, 2026, 14(1): 8-21. https://doi.org/10.1016/j.cj.2025.06.003

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Received: 08 April 2025
Revised: 10 June 2025
Accepted: 26 June 2025
Published: 04 July 2025
© 2025 Crop Science Society of China and Institute of Crop Science, CAAS.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).