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Research paper | Open Access

Genome-wide analysis of the barley non-specific lipid transfer protein gene family

Mengyue Zhanga, Yujin Kima,b, Jie Zonga, Hong Lina, Anne Dievarta,c,d, Huanjun Lia, Dabing Zhanga, Wanqi Lianga( )
Joint International Research Laboratory of Metabolic and Developmental Sciences, Shanghai Jiao Tong University-University of Adelaide Joint Centre for Agriculture and Health, State Key Laboratory of Hybrid Rice, School of Life Sciences and Biotechnology, Shanghai Jiao Tong University, Shanghai 200240, China
Graduate School of Biotechnology and Crop Biotech Institute, Kyung Hee University, Yongin 17104, Korea
CIRAD, UMR AGAP, F34398 Montpellier, France
CIRAD, INRA, Montpellier SupAgro, F34398 Montpellier, France

Peer review under responsibility of Crop Science Society of China and Institute of Crop Science, CAAS.

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Abstract

Non-specific lipid transfer proteins (nsLTPs) are small, basic proteins that are characterized by an eight-cysteine motif. The biological functions of these proteins have been reported to involve plant reproduction and biotic or abiotic stress response. With the completion of the barley genome sequence, a genome-wide analysis of nsLTPs in barley (Hordeum vulgare L.) (HvLTPs) will be helpful for understanding the function of nsLTPs in plants. We performed a genome-wide analysis of the nsLTP gene family in barley and identified 70 nsLTP genes, which can be divided into five types (1, 2, C, D, and G). Each type of nsLTPs shares similar exon and intron gene structures. Expression analysis showed that barley nsLTPs have diverse expression patterns, revealing their various roles. Our results shed light on the phylogenetic relationships and potential functions of barley nsLTPs and will be useful for future studies of barley development and molecular breeding.

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The Crop Journal
Pages 65-76

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Cite this article:
Zhang M, Kim Y, Zong J, et al. Genome-wide analysis of the barley non-specific lipid transfer protein gene family. The Crop Journal, 2019, 7(1): 65-76. https://doi.org/10.1016/j.cj.2018.07.009

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Received: 04 May 2018
Revised: 13 July 2018
Accepted: 06 September 2018
Published: 28 September 2018
© 2018 Crop Science Society of China and Institute of Crop Science, CAAS.

This is an open access article under the CC BY-NC-ND license (http://creativecommons.org/licenses/by-nc-nd/4.0/).