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Research paper | Open Access

Metagenomics reveals diverse community of putative mercury methylators across different biogeochemical niches in Sansha Yongle blue hole

Heyu Lin1,8Xiao-Yu Zhu2Chun-Xu Xue2Peng Yao3,4Liang Fu5Zuosheng Yang6Xiao-Hua Zhang2,3,4( )John W. Moreau7( )
School of Geographical, Atmospheric and Earth Sciences, The University of Melbourne, Parkville, VIC 3010, Australia
College of Marine Life Sciences, and Institute of Evolution & Marine Biodiversity, Ocean University of China, Qingdao 266003, China
Laboratory for Marine Ecology and Environmental Science, National Laboratory for Marine Science and Technology (Qingdao), Qingdao 266237, China
Frontiers Science Center for Deep Ocean Multispheres and Earth System, and Key Laboratory of Marine Chemistry Theory and Technology, Ministry of Education, Ocean University of China, Qingdao 266100, China
Sansha Track Ocean Coral Reef Conservation Research Institute, Sansha 573199, China
College of Marine Geosciences, Ocean University of China, Qingdao 266100, China
School of Geographical and Earth Sciences, University of Glasgow, Glasgow G12 8RZ, UK
Present Address: Centre for Microbiome Research, School of Biomedical Sciences, Queensland University of Technology, Translational Research Institute, Woolloongabba, QLD 4102, Australia

Edited by Chengchao Chen.

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Abstract

Methylmercury (MeHg) is a potent neurotoxin and bioaccumulates in food webs. Microbial transformation of inorganic mercury (Hg) produces most of the MeHg in the marine environment. The gene pair hgcAB encodes for Hg methylation, a process predominantly attributed to anaerobic bacteria. However, recent studies indicate the formation of methylmercury in low-oxygen zones within marine water columns, although the mechanisms remain poorly understood. "Blue holes" are marine sinkholes containing redox gradients stratified with depth and high microbial diversity across a range of biogeochemical cycles. Here, we present the first metagenomic analysis focused on the potential for Hg methylation in a blue hole ecosystem. Yongle Blue Hole (YBH), currently the world's deepest known blue hole, was selected as a representative site to investigate the genetic potential for Hg methylation and to explore the functional capabilities of putative Hg-methylators within this unique environment. Metagenomic analysis showed that the anoxic sulfidic deep water was likely to be a hotspot for Hg methylation, driven by abundant and diverse Deltaproteobacteria. In the suboxic intermediate layer, Nitrospina and Myxococcota dominated the Hg-methylating community. Furthermore, Hg methylators were found to have different lifestyles (free-living or particle-associated) and to occupy distinct ecological niches within the YBH. In addition, the contribution of sinking particles to Hg methylation, especially in the deep anoxic water column, was highlighted. Our study unveils the biodiversity and survival strategies of Hg methylators across distinct environments. The findings suggest that blue holes could serve as model stratified ecosystems for studying Hg methylation processes across different habitats.

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Marine Life Science & Technology
Pages 206-220

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Cite this article:
Lin H, Zhu X-Y, Xue C-X, et al. Metagenomics reveals diverse community of putative mercury methylators across different biogeochemical niches in Sansha Yongle blue hole. Marine Life Science & Technology, 2026, 8(1): 206-220. https://doi.org/10.1007/s42995-025-00332-7

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Received: 10 January 2025
Accepted: 29 October 2025
Published: 19 November 2025
© The Author(s) 2025

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