AI Chat Paper
Note: Please note that the following content is generated by AMiner AI. SciOpen does not take any responsibility related to this content.
{{lang === 'zh_CN' ? '文章概述' : 'Summary'}}
{{lang === 'en_US' ? '中' : 'Eng'}}
Chat more with AI
PDF (583.5 KB)
Collect
Submit Manuscript AI Chat Paper
Show Outline
Outline
Show full outline
Hide outline
Outline
Show full outline
Hide outline
Invited Review | Open Access

Opinion: hazards faced by macromolecules when confined to thin aqueous films

Robert M. Glaeser1( )Bong-Gyoon Han1
Lawrence Berkeley National Laboratory, University of California, Berkeley, CA 94720, USA
Show Author Information

Graphical Abstract

Abstract

Samples prepared for single-particle electron cryo-microscopy (cryo-EM) necessarily have a very high surface-to-volume ratio during the short period of time between thinning and vitrification. During this time, there is an obvious risk that macromolecules of interest may adsorb to the air–water interface with a preferred orientation, or that they may even become partially or fully unfolded at the interface. In addition, adsorption of macromolecules to an air–water interface may occur even before thinning. This paper addresses the question whether currently used methods of sample preparation might be improved if one could avoid such interfacial interactions. One possible way to do so might be to preemptively form a surfactant monolayer over the air–water interfaces, to serve as a structure-friendly slide and coverslip. An alternative is to immobilize particles of interest by binding them to some type of support film, which—to continue using the analogy—thus serves as a slide. In this case, the goal is not only to prevent the particles of interest from diffusing into contact with the air–water interface but also to increase the number of particles seen in each image. In this direction, it is natural to think of developing various types of affinity grids as structure-friendly alternatives to thin carbon films. Perhaps ironically, if precautions are not taken against adsorption of particles to air–water interfaces, sacrificial monolayers of denatured protein may take the roles of slide, coverslip, or even both.

References

 
Agard D, Cheng YF, Glaeser RM, Subramaniam S (2014) Singleparticle cryo-electron microscopy (Cryo-EM): progress, challenges, and perspectives for further improvement. In: Hawkes PW (ed) Advances in imaging and electron physics, vol 185. Academic Press, New York, pp 113–137
 

Benjamin CJ, Wright KJ, Hyun S-H, Krynski K, Yu G, Bajaj R, Guo F, Stauffacher CV, Jiang W, Thompson DH, (2016) Nonfouling NTA-PEG-based TEM grid coatings for selective capture of histidine-tagged protein targets from cell lysates.Langmuir 32:551-559

 

Chamberlain AK, Handel TM, Marqusee S, (1996) Detection of rare partially folded molecules in equilibrium with the native conformation of RNaseH.Nat Struct Biol 3:782-787

 

Crucifix C, Uhring M, Schultz P, (2004) Immobilization of biotinylated DNA on 2-D streptavidin crystals.J Struct Biol 146:441-451

 

Frederik PM, Stuart MCA, Bomans PHH, Busing WM, (1989) Phospholipid, natures’s own slide and coverslip for cryo-electron microscopy.J Microsc-Oxf 153:81-92

 

Glaeser Robert M, Han B-G, Csencsits R, Killilea A, Pulk A, Cate Jamie HD, (2016) Factors that influence the formation and stability of thin, cryo-EM specimens.Biophys J 110:749-755

 

Han BG, Walton RW, Song A, Hwu P, Stubbs MT, Yannone SM, Arbelaez P, Dong M, Glaeser RM, (2012) Electron microscopy of biotinylated protein complexes bound to streptavidin monolayer crystals.J Struct Biol 180:249-253

 

Kelly DF, Abeyrathne PD, Dukovski D, Walz T, (2008) The affinity grid: a pre-fabricated EM grid for monolayer purification.J Mol Biol 382:423-433

 

Kelly DF, Dukovski D, Walz T, (2010) Strategy for the use of affinity grids to prepare non-his-tagged macromolecular complexes for single-particle electron microscopy.J Mol Biol 400:675-681

 

Llaguno MC, Xu H, Shi L, Huang N, Zhang H, Liu QH, Jiang QX, (2014) Chemically functionalized carbon films for single molecule imaging.J Struct Biol 185:405-417

 

Maity H, Maity M, Krishna MMG, Mayne L, Englander SW, (2005) Protein folding: the stepwise assembly of foldon units.Proc Natl Acad Sci USA 102:4741-4746

 

Quinn PJ, Dawson RMC, (1970) An analysis of interaction of protein with lipid monolayers at the air-water interface.Biochem J 116:671-680

 

Raffaini G, Ganazzoli F, (2010) Protein adsorption on a hydrophobic surface: a molecular dynamics study of lysozyme on graphite.Langmuir 26:5679-5689

 

Sosnick TR, Barrick D, (2011) The folding of single domain proteins—have we reached a consensus?.Curr Opin Struct Biol 21:12-24

 

Taylor KA, Glaeser RM, (2008) Retrospective on the early development of cryoelectron microscopy of macromolecules and a prospective on opportunities for the future.J Struct Biol 163:214-223

 

Trurnit HJ, (1960) A theory and method for the spreading of protein monolayers.J Colloid Sci 15:1-13

 
Wang LG, Sigworth FJ (2010) Liposomes on a streptavidin crystal: a system to study membrane proteins by cryo-EM. In: Jensen GJ (ed) Methods in enzymology: cryo-em, part a—sample preparation and data collection, vol 481. Elsevier, Boston, pp 147–164
 

Wang LG, Ounjai P, Sigworth FJ, (2008) Streptavidin crystals as nanostructured supports and image-calibration references for cryo-EM data collection.J Struct Biol 164:190-198

 

Yoshimura H, Scheybani T, Baumeister W, Nagayama K, (1994) 2-Dimensional protein array growth in thin layers of protein solution on aqueous subphases.Langmuir 10:3290-3295

 

Yu GM, Vago F, Zhang DS, Snyder JE, Yan R, Zhang C, Benjamin C, Jiang X, Kuhn RJ, Serwer P, Thompson DH, Jiang W, (2014) Single-step antibody-based affinity cryo-electron microscopy for imaging and structural analysis of macromolecular assemblies.J Struct Biol 187:1-9

 

Yu G, Li K, Jiang W, (2016) Antibody-based affinity cryo-EM grid.Methods 100:16-24

Biophysics Reports
Pages 1-7
Cite this article:
Glaeser RM, Han B-G. Opinion: hazards faced by macromolecules when confined to thin aqueous films. Biophysics Reports, 2017, 3(1-3): 1-7. https://doi.org/10.1007/s41048-016-0026-3

386

Views

10

Downloads

128

Crossref

0

Scopus

4

CSCD

Altmetrics

Received: 28 April 2016
Accepted: 16 May 2016
Published: 22 July 2016
© The Author(s) 2016

This article is distributed under the terms of the Creative Commons Attribution 4.0 International License (http://creativecommons.org/licenses/by/4.0/), which permits unrestricted use, distribution, and reproduction in any medium, provided you give appropriate credit to the original author(s) and the source, provide a link to the Creative Commons license, and indicate if changes were made.

Return