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Method | Open Access

Rapid and quantitative phage susceptibility test by ramanome

Xiao Han1,2,#Xiaofu Wan3,#Yang Zhou3,4Xiaoting Fu2Xiaoshan Zheng2,5Bo Gao2,6Shi Huang7Anle Ge2,5Jiadong Huang8( )Hongzhou Lu3 ( )Jian Xu2,5 ( )
School of Chemistry and Chemical Engineering, University of Jinan, Jinan, China
Single‐Cell Center, Shandong Energy Institute, Qingdao New Energy Shandong Laboratory, Qingdao Institute of Bioenergy and Bioprocess Technology, Chinese Academy of Sciences, Qingdao, China
National Clinical Research Center for Infectious Diseases, Shenzhen Clinical Medical Research Center for Tuberculosis, Shenzhen Third People's Hospital, Southern University of Science and Technology, Shenzhen, China
Molecular Biology Research Center & Center for Medical Genetics, School of Life Sciences, Central South University, Changsha, China
University of Chinese Academy of Sciences, Beijing, China
Single‐Cell Biotechnology Ltd., Qingdao, China
Faculty of Dentistry, University of Hong Kong, Hong Kong, China
School of Life Sciences, University of Jinan, Jinan, China

#Xiao Han and Xiaofu Wan contributed equally to this work.

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Abstract

Antimicrobial resistance poses an escalating global threat, renewing interest in bacteriophage therapy as a precision alternative to antibiotics. However, clinical translation remains hindered by the lack of rapid and quantitative phage susceptibility testing (PST) platforms capable of evaluating host range, infection potency, and effective multiplicity of infection (MOI). Here, we present a ramanome-based phage susceptibility test (RPST), a phenotypic platform that captures infection-induced remodeling of bacterial macromolecular composition to unify these diagnostic requirements within a single workflow. RPST integrates four Raman biomarkers into a Composite Infection Index (CII), enabling rapid and lysis-independent discrimination between susceptible and resistant bacterial populations within ~1 h, with 96.0% categorical concordance (24/25) to plaque assays. As a continuous population-level metric, CII quantifies the proportion of infected cells, allowing quantitative ranking of phage potency against shared hosts. By resolving CII trajectories across the MOI and time, RPST further determines the minimal effective MOI, which is the lowest phage-to-bacterium ratio sustaining self-propagating infection, thereby defining the lower boundary for therapeutic feasibility. Together, these capabilities transform PST from static compatibility assays into a dynamic and quantitative framework that bridges in vitro infectivity assessment and infection dynamics relevant to phage therapy.

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Pages 369-382

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Cite this article:
Han X, Wan X, Zhou Y, et al. Rapid and quantitative phage susceptibility test by ramanome. mLife, 2026, 5(3): 369-382. https://doi.org/10.1002/mlf2.70089

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Received: 13 November 2025
Accepted: 11 March 2026
Published: 21 May 2026
© 2026 The Author(s). mLife published by John Wiley & Sons Australia, Ltd on behalf of Institute of Microbiology, Chinese Academy of Sciences.

This is an open access article under the terms of the Creative Commons Attribution License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited.