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Original Article | Open Access

Ginkgo biloba active compounds can modulate the development of acute mountain sickness and ischemic stroke as discovered by network pharmacology and molecular docking

Haoran Guo1,2Xueran Kang3Ying Xu2,4Chengbin Wang1( )Chi Wang1 ( )
Department of Laboratory Medicine, The First Medical Center of Chinese PLA General Hospital, Beijing, China
Medical School of Chinese PLA, Beijing, China
Shanghai Jiao Tong University, Shanghai, China
School of Laboratory Medicine, Weifang Medical College, Weifang, Shandong, China
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Abstract

Background

A combination of molecular docking, molecular dynamics simulations, and herbal network pharmacology was used to investigate the shared key targets and potential mechanisms underlying the preventive effects of Ginkgo biloba active compounds against acute mountain sickness (AMS) and ischemic stroke (IS).

Material and Methods

The Traditional Chinese Medicine Systems Pharmacology Database and Analysis Platform was used to screen the main active compounds of Ginkgo biloba and their corresponding targets. We obtained AMS‐related genes by mining several databases and cross‐correlated them with key active compounds of Ginkgo biloba to identify relevant action targets for treating AMS. The STRING database was used to construct a protein–protein interaction network of the effect of Ginkgo biloba active compounds on AMS targets. The expression of genes in the network was analyzed in an IS dataset to identify common key targets of Ginkgo biloba active compounds for both AMS and IS prevention.

Results

The intersection between the targets of Ginkgo biloba active compounds and AMS‐related genes identified 43 overlapping genes. Analysis of the protein–protein interaction network showed that VEGFA, TP53, SERPINE1, and PTGS2 were among the key hub genes. Analysis of the IS dataset identified significant differences in the expression levels of CAT, TP53, CXCL8, NFKBIA, and PTGS2. These genes were used to construct a visual nomogram prediction model for IS prognosis with promising clinical implications. Molecular docking and molecular dynamics simulations indicated that sesamin stably targeted and bound to PTGS2.

Conclusions

Active ingredients of Ginkgo biloba, including luteolin, quercetin, and sesamin, have the potential to modulate the development of AMS and IS through targeted interactions with key proteins, including TP53, CXCL8, NFKBIA, PTGS2, and CAT.

Graphical Abstract

We employed a combination of molecular docking, molecular dynamic simulations, and herbal network pharmacology to investigate the shared key targets and potential mechanisms underlying Ginkgo biloba's preventive effects against acute mountain sickness (AMS) and ischemic stroke (IS). The main target genes of Ginkgo biloba were cross‐correlated with the AMS‐related genes and identified 43 overlapping genes including VEGFA, TP53, SERPINE1, PTGS2, etc. The ischemic stroke dataset demonstrated significant differences in CAT, TP53, CXCL8, NFKBIA and PTGS2 expression levels. Molecular docking and dynamic simulations indicated that sesamin exhibited stable targeting and binding to PTGS2. The active ingredients of Ginkgo biloba, including luteolin, quercetin and sesamin, had the potential to modulate the development of AMS and IS through targeted interactions with key proteins including TP53, CXCL8, NFKBIA, PTGS2, and CAT.

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iLABMED
Pages 178-196

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Cite this article:
Guo H, Kang X, Xu Y, et al. Ginkgo biloba active compounds can modulate the development of acute mountain sickness and ischemic stroke as discovered by network pharmacology and molecular docking. iLABMED, 2024, 2(3): 178-196. https://doi.org/10.1002/ila2.58

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Received: 06 April 2024
Accepted: 17 July 2024
Published: 03 September 2024
© 2024 The Author(s). Tsinghua University Press.

This is an open access article under the terms of the Creative Commons Attribution‐NonCommercial License, which permits use, distribution and reproduction in any medium, provided the original work is properly cited and is not used for commercial purposes.